Basic Information
VIS ID
TVIS30005692
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
109177176/107417418 (Hg38)
End
109177176/107417418 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/3149013; hsa-mir-202/Downstream/3480672;
Nearest TSS
ENST00000439456/Upstream/252884; ENST00000421481/Downstream/623281;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/252371, chr10-CpG: 80/Downstream/497020
Nearby gene
SORCS1(No orient, 252710)
Upstream sequence
TGGGTTTTTCTTTTTGGTGTCAGGGCATTTGTGCACCTTCTGCGGTAATGTGATTATCTGAGAGTACAAGAGGATGCATGAAAAGTTGGCTGGTAGAAAC
Downstream sequence
AAGATTTGGAAGTTGTAAAGCAACTCTGGCAACTGCTTAGcactgatggctattgtttagtctgcacaatgtcatccagcacaatattcaatattctttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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