Basic Information
VIS ID
TVIS30005706
Fusion event
HIV-PLEKHA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
End
124161670/122402154 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-590-3p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-93-5p ; hsa-mir-32-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-769-5p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-125b-2-3p ; hsa-mir-190a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-338-3p ; hsa-mir-92b-3p ; hsa-mir-634 ; hsa-mir-1179 ; hsa-mir-4310 ; hsa-mir-5011-5p ; hsa-mir-5697 ; hsa-mir-7157-5p ; hsa-mir-371a-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-630 ; hsa-mir-371b-5p ; hsa-mir-6883-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-3607-5p ; hsa-mir-4524a-5p ; hsa-mir-5197-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-let-7e-3p ; hsa-mir-545-3p ; hsa-mir-570-5p ; hsa-mir-3148 ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-4477a ; hsa-mir-4678 ; hsa-mir-548ba ; hsa-mir-3973 ; hsa-mir-124-5p ; hsa-mir-3607-3p ; hsa-mir-1206 ; hsa-mir-3650 ; hsa-mir-7154-5p ; hsa-mir-411-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-4272 ; hsa-mir-4470 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-1278 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-1183 ; hsa-mir-101-3p ; hsa-mir-433-3p ; hsa-mir-6853-3p ; hsa-mir-4455 ; hsa-mir-8060 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-454-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-383-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929
Nearest miRNA
hsa-mir-107/Upstream/2443562; hsa-mir-202/Downstream/14811;
Upstream sequence
TTGTAATTGAATGGGTATTGCAAGTCAAATAACTGAGAACTTTGTATTTTAGAATGTATAATGCACATACTTTTGACAACCCTTTTTTTTCTAAAATCTC
Downstream sequence
AAACTTACAGGAATAGTAACATACAGTAATAGACTTGACATTCATAGTTATTGGAGTATTTAGAATGGGTGATTTTAGTTGGAATCAAAAACTAAGATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate