Basic Information
VIS ID
TVIS30005711
Fusion event
HIV-LOC107984128 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
GRCh37/hg19
Start
125713375/123953859 (Hg38)
End
125713375/123953859 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
LOC107984128
Nearest miRNA
hsa-mir-107/Upstream/1536792; hsa-mir-202/Downstream/1078924;
Nearest TSS
ENST00000439456/Upstream/13592; ENST00000487190/Downstream/84760;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/61922, chr10-CpG: 53/Downstream/18845
Nearby gene
CHST15(No orient, 53807)
Upstream sequence
gtggcgagcacctgtaatcccagctactcggcaggctgaggcaggagaattgcttgaacccaagaggcagaagttgcagtgagctgagattgcgccattg
Downstream sequence
cactccagccttggcgacagagcaagactccgtcttgaggaaaaaaaaaattagctgggtatggcaacacacacctatggtcccagccacttaggaggct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate