Basic Information
VIS ID
TVIS30005713
Fusion event
HIV-C10orf143 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
131874308/130076044 (Hg38)
End
131874308/130076044 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
C10orf143
Nearest miRNA
hsa-mir-107/Upstream/232670; hsa-mir-202/Downstream/886544;
Nearest TSS
ENST00000439456/Upstream/112203; ENST00000486974/Downstream/34758;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/30089, chr10-CpG: 95/Downstream/34423
Upstream sequence
aggtagtttttGTGTGTGTATGTGTGTGTtttttgtttgtttgtttgtttttttttttggaaatgatggagtctcattctgtcactcaggctggagtgca
Downstream sequence
atggcgcaatcttggctcaatgcaacctccacctcccaggttcaagcgattttcctgcctcattctcccaagctggaattacaggcaccaggtagttctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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