Basic Information
VIS ID
TVIS30005714
Fusion event
HIV-JAKMIP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
133980934/132167430 (Hg38)
End
133980934/132167430 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
JAKMIP3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-3663-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-660-3p ; hsa-mir-1306-5p ; hsa-mir-1228-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6736-3p ; hsa-mir-149-3p ; hsa-mir-3141 ; hsa-mir-3153 ; hsa-mir-4728-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6768-3p ; hsa-mir-6783-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p
Nearest miRNA
hsa-mir-107/Upstream/1204762; hsa-mir-202/Downstream/1080081;
Nearest TSS
ENST00000439456/Upstream/23714; ENST00000493927/Downstream/17569;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/26655, chr10-CpG: 264/Downstream/17978
Upstream sequence
AGTGTAGCAGAAACATGCAGGACCCTCTCTAGGGGGTCTTTCTGCTTTGGTGGCACTCGGCAGCAGGCCCTGGGGGCAGACACGGTGGTTCTGTGATTCG
Downstream sequence
TCCTTGTTCTTTTCTGGGTGGTGCTGAGCACAAGCTCGGGCGGTGCTGGAGATTCAGCCAGGAGGGCTTGGTCTCCCTGCCAGGCCGGGCAGCTTAGGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate