VISDB Viral Integration Site DataBase

VIS ID

TVIS30005726

Fusion event

HIV-PTDSS2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p15.5

Reference genome

Start

End

464448/464448 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-222-3p ; hsa-mir-7977 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4508 ; hsa-mir-6514-3p ; hsa-mir-185-3p ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-3178 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4284 ; hsa-mir-6811-3p ; hsa-mir-6847-3p ; hsa-mir-214-5p ; hsa-mir-4486 ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-4267 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-24-3p ; hsa-mir-3622b-5p ; hsa-mir-6842-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6746-5p ; hsa-mir-383-3p ; hsa-mir-6771-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-4266 ; hsa-mir-1827 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p

Nearest miRNA

hsa-mir-6743/Upstream/255042; hsa-let-7a-2/Downstream/103641;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/3733, chr11-CpG: 18/Downstream/2

Upstream sequence

cgtacggctgatgagttttaacagactcagagccccgtgtgcccaccactgcaTGGGGGTGCGAAAGTGTTCACTGTTCCCTGCGCTCAGAGTGCCTCAC

Downstream sequence

CCCGGCTCGGGCAGTGCGGAGGCATCTCCCCTGCGCTCAGAGTGCCTCACCCCGGCTCGGGCAGTGCCAGTGCATCTGCCTGGGTGAGAGCAGGGTCTGT