VISDB Viral Integration Site DataBase

VIS ID

TVIS30005749

Fusion event

HIV-TEAD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p15.3

Reference genome

Start

End

12788819/12767272 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-320a ; hsa-mir-215-3p ; hsa-mir-503-3p ; hsa-mir-548at-5p ; hsa-mir-873-5p ; hsa-mir-101-5p ; hsa-mir-377-3p ; hsa-mir-1324 ; hsa-mir-5004-3p ; hsa-mir-1261 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-624-3p ; hsa-mir-548e-5p ; hsa-mir-7150 ; hsa-mir-580-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-5580-5p ; hsa-mir-219a-1-3p ; hsa-mir-6868-5p ; hsa-mir-9500 ; hsa-mir-4267 ; hsa-mir-4445-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-494-3p ; hsa-mir-548p ; hsa-mir-561-3p ; hsa-mir-5187-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-3140-5p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4301 ; hsa-mir-181a-2-3p

Nearest miRNA

hsa-mir-210/Upstream/603505; hsa-let-7a-2/Downstream/3202261;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/91838, chr11-CpG: 198/Downstream/241511

Upstream sequence

CCCAGCCACTCGAGAACTGAATCATATGAGCAGTGTGGGGCCAGAGCTACTGTCCTGGGCTTTTGGCCTGTTCCCCATCTTACCATACATGAATTGGGAC

Downstream sequence

ACAAACCAGACCAGGAGTCAGGGTTTCTTAAGGCCTTAAAGAGCATACTTTTTTTCTAAGGGTTCTGAAAATGAAAACATTTAAAGCATTTTTGAATTCC