Basic Information
VIS ID
TVIS30005755
Fusion event
HIV-NELL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
21512980/21491434 (Hg38)
End
21512980/21491434 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11C ; FRA11I
Target gene
NELL1
Nearest miRNA
hsa-mir-210/Upstream/1731351; hsa-let-7a-2/Downstream/1927671;
Nearest TSS
ENST00000527297/Upstream/207697; ENST00000530837/Downstream/622014;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/821135, chr11-CpG: 88/Downstream/701192
Upstream sequence
aacgtttaagtctttaatccatcttgaattaatttttgtataaggtataaggaagggatccagtttcagctctctacatatggctagccagttttcccag
Downstream sequence
caccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagataagcggcgctatttctgagggct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate