Basic Information
VIS ID
TVIS30005759
Fusion event
HIV-KIF18A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
28100022/28078475 (Hg38)
End
28100022/28078475 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF18A
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-210/Upstream/21565; hsa-let-7a-2/Downstream/399006;
Nearest TSS
ENST00000527297/Upstream/58900; ENST00000403099/Downstream/10105;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/355458, chr11-CpG: 25/Downstream/31841
Upstream sequence
ACTTAAAGAGATAATTTCTTAGTTTTTCTATAACTTTTTATTCAAGGACAAAGTTAATATTTGTCAATTTTGTGATCTAGACTTATTTTAGGTGGTGGTG
Downstream sequence
TTCACTGATTAGGATGAAAGGAAGGGAATTGGTATCAAAGGTTTCTAGAGAGCTCCTTAACAACACCAAAAAAAGCTATCGTTTTAAAACTGAAAGAGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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