Basic Information
VIS ID
TVIS30005761
Fusion event
HIV-IMMP1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
31503448/31481901 (Hg38)
End
31503448/31481901 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
IMMP1L
Nearest miRNA
hsa-mir-210/Upstream/3004353; hsa-let-7a-2/Downstream/3459936;
Nearest TSS
ENST00000527297/Upstream/25563; ENST00000638764/Downstream/27662;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/111950, chr11-CpG: 33/Downstream/27683
Upstream sequence
TTAAAACCTAATTTTTCCCTCAATTTAAAAAAAAAGGTATATTTAAAATCCTAAGCTTTAAAGATGATGCCCAATGAAGTAACAGGGATTGTGTCTGTGA
Downstream sequence
ATACAAAATTGTGTATTTCATGAATAAACTTATTTATGAATACTATTGCTTAAAATATTAAAAATCATAACATTTATCTCTTCATCCCCAAATTCCTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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