VISDB Viral Integration Site DataBase

VIS ID

TVIS30005764

Fusion event

HIV-QSER1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p13

Reference genome

Start

End

32949915/32928369 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-100-5p ; hsa-mir-135a-3p ; hsa-mir-450a-5p ; hsa-mir-627-3p ; hsa-mir-4668-5p ; hsa-mir-5584-5p ; hsa-mir-4294 ; hsa-mir-3607-3p ; hsa-mir-3686 ; hsa-mir-338-5p ; hsa-mir-616-3p ; hsa-mir-4289 ; hsa-mir-3674 ; hsa-mir-6832-5p ; hsa-mir-5680 ; hsa-mir-514a-3p ; hsa-mir-514b-3p ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-4274 ; hsa-mir-3919 ; hsa-mir-548e-5p ; hsa-mir-182-5p ; hsa-mir-4793-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-409-5p ; hsa-mir-23c ; hsa-mir-4662a-3p ; hsa-mir-4762-5p ; hsa-mir-4777-3p ; hsa-mir-221-5p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-3128 ; hsa-mir-4495 ; hsa-mir-6809-5p ; hsa-mir-6830-5p ; hsa-mir-7113-3p ; hsa-mir-8073 ; hsa-mir-6083 ; hsa-mir-4732-5p ; hsa-mir-3613-5p ; hsa-mir-3074-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-9500 ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4756-3p ; hsa-mir-4470 ; hsa-mir-371a-5p ; hsa-mir-1266-3p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4742-3p ; hsa-mir-4272 ; hsa-mir-31-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6844 ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-548c-3p ; hsa-mir-5702

Nearest miRNA

hsa-mir-210/Upstream/4450821; hsa-let-7a-2/Downstream/2013468;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/34401, chr11-CpG: 70/Downstream/87291

Upstream sequence

AGGTGGATAAAATTCAAGAATTTATTACTGGCAGAAATTTAGTTTTAGCATTCTGACAAAAACTAGTAAGTTGACATTGAGGGGTAGATAATGATTAAAG

Downstream sequence

AAGGTCTCATATAAGGTTTATATCTAGCAATTACTTGTCTACTTGAAAGAAGCAAAGATTAAAATTTATTTTAGTGACTTCAGAATGGGTAGGTGTTATA