Basic Information
VIS ID
TVIS30005766
Fusion event
HIV-CSTF3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
33152442/33130896 (Hg38)
End
33152442/33130896 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
CSTF3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-24-3p ; hsa-mir-378a-3p ; hsa-mir-132-3p
Nearest miRNA
hsa-mir-210/Upstream/4653348; hsa-let-7a-2/Downstream/1810941;
Nearest TSS
ENST00000527297/Upstream/44992; ENST00000531870/Downstream/30525;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/90596, chr11-CpG: 24/Downstream/30545
Upstream sequence
atggcaaaacaaaaaaatacaaaattttgttatttttgtctctaccaaaaacaacaaccaaccaacccaaaacaccacaaaaattagccgggtgtggtgg
Downstream sequence
tatgcacctgtattcccagctactctggaggctgaggtgggaggatcacctgagcctgtgcaggtcaaggctgcagtaggccatgattacattactgcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate