VISDB Viral Integration Site DataBase

VIS ID

TVIS30005769

Fusion event

HIV-SLC1A2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p13

Reference genome

Start

End

35287578/35266031 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1324 ; hsa-mir-6776-3p ; hsa-mir-497-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-548as-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-383-3p ; hsa-mir-15a-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-564 ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-31-5p ; hsa-mir-200c-3p

Nearest miRNA

hsa-mir-1343/Upstream/324111; hsa-let-7a-2/Downstream/744067;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/126578, chr11-CpG: 143/Downstream/152843

Upstream sequence

gttggaggtgatgcttatacttctctcataggccgtgtgaaaattcagtgagataacgtatgtaaagtgcttagtaaaatgtctggcaaatggtaaacac

Downstream sequence

caataaCCAGTAGCAAAGGAAAAGGAGGAGGAGGAAAGAAAAGATTAAAGAAAAATAATGTGTCCAAATCAGAACTAGTACACAGGCTCCAGACACACCT