VISDB Viral Integration Site DataBase

VIS ID

TVIS30005770

Fusion event

HIV-TRIM44 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p13

Reference genome

Start

End

35803931/35782382 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-222-3p ; hsa-mir-17-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-4674 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4764-3p ; hsa-mir-3177-5p ; hsa-mir-4417 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-4437 ; hsa-mir-637 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-545-3p ; hsa-mir-511-3p ; hsa-mir-3908 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-939-5p ; hsa-mir-6883-5p ; hsa-mir-1343-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6827-5p ; hsa-mir-4539 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-4293 ; hsa-mir-1321 ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-2115-5p ; hsa-mir-5009-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-4668-3p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-6826-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-4323 ; hsa-mir-3591-3p ; hsa-mir-21-3p

Nearest miRNA

hsa-mir-1343/Upstream/840462; hsa-let-7a-2/Downstream/227716;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/119028, chr11-CpG: 80/Downstream/161684

Upstream sequence

ttagccagttggatccaagggaatgaaattcttggcagaggaaagatcctatacTTATGTATAGGGCTTTTAATTCTCCAGAGTACTTACTCATtgtatt

Downstream sequence

agttagaattgtgttctgttttgaggaacagaaaactctggtatcagtagaataagtaaataaaggtatgtttgtttcacagaataaatttggagatgag