Basic Information
VIS ID
TVIS30005773
Fusion event
HIV-LOC105376634 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
38332177/38310627 (Hg38)
End
38332177/38310627 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376634
Nearest miRNA
hsa-mir-1343/Upstream/2300423; hsa-let-7a-2/Downstream/5249029;
Nearest TSS
ENST00000527297/Upstream/372026; ENST00000526554/Downstream/188368;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1800160, chr11-CpG: 49/Downstream/5001262
Upstream sequence
aacaatgttttcattttcctagagcctcagaaggagcgtggcctgacaacaccgtgatttgggcctagcaatgctgatttcagacttctgcgccccagaa
Downstream sequence
cagtgaaatcataaatatctgttgccttaaacaatgaagtttgtagcaagttgttatagcagccactggacactaatataTGTTCCTATTTGCTTTTTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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