Basic Information
VIS ID
TVIS30005775
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
39497230/39475680 (Hg38)
End
39497230/39475680 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/3465476; hsa-let-7a-2/Downstream/4083976;
Nearest TSS
ENST00000527297/Upstream/826822; ENST00000524493/Downstream/766203;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2965213, chr11-CpG: 49/Downstream/3836209
Nearby gene
LRRC4C(No orient, 638521)
Upstream sequence
TTTTTTTTTTTTACtttttttttaaaattatactttaagttctagggtacatgtgcacaacatgcaggtttgttacatatgtatacatgtaccatgttgg
Downstream sequence
tgtgctgaacccattgactcgtcatttacattaggtatatctcctaatgctatccctcctccctcccgccaccccacaacaggccctggtgtgtgatgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate