Basic Information
VIS ID
TVIS30005783
Fusion event
HIV-ATG13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
46687844/46666294 (Hg38)
End
46687844/46666294 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATG13
miRNAs that regulate target gene
hsa-mir-10b-5p ; hsa-mir-6515-5p ; hsa-mir-6797-5p ; hsa-mir-4443 ; hsa-mir-1249-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4522 ; hsa-mir-301b-5p ; hsa-mir-4779 ; hsa-mir-301a-5p ; hsa-mir-4714-5p
Nearest miRNA
hsa-mir-129-2/Upstream/214405; hsa-let-7a-2/Downstream/86831;
Nearest TSS
ENST00000527297/Upstream/785; ENST00000532067/Downstream/1578;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/48358, chr11-CpG: 34/Downstream/34135
Upstream sequence
GGAAGCTGGCGTGGAACTTCAGTACCAACGGGAAACAGCAGGAGCTCGGTTCTTGTCACCCTTATCCAGTAAAGGGGTTGTCAGATGTTTTTCTCTTACC
Downstream sequence
CCAAGATTTATATCCTTGGAGTCAGTCCTTAGTGTTTCCCAAGGACCAGAACAGGGTGTTGACCATGGCCCTGAAGTCTGGGCCACAGTATGTCTGTGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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