Basic Information
VIS ID
TVIS30005791
Fusion event
HIV-KBTBD4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
47597644/47576092 (Hg38)
End
47597644/47576092 (Hg38)
Orient
-
Location type
Intronic
Target gene
KBTBD4
miRNAs that regulate target gene
hsa-mir-18a-3p
Nearest miRNA
hsa-mir-129-2/Upstream/175050; hsa-let-7a-2/Downstream/520690;
Nearest TSS
ENST00000527297/Upstream/10194; ENST00000450908/Downstream/1633;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/10036, chr11-CpG: 69/Downstream/2485
Upstream sequence
caggtgtgcaccaccacgcctggctaattttcttattttctgtatagacaaggtctcactgttgtccaggctggtctcaaactcctgccatcaagggatc
Downstream sequence
ctccctccttggcctcccaaagtgctgggattacaggcatgagccaccatgcctggcGGGTCTTGCttttttttttttttttttttttttttgagatgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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