Basic Information
VIS ID
TVIS30005792
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
47668565/47647013 (Hg38)
End
47668565/47647013 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/245971; hsa-let-7a-2/Downstream/449769;
Nearest TSS
ENST00000527297/Upstream/4390; ENST00000526550/Downstream/43357;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4234, chr11-CpG: 34/Downstream/68174
Nearby gene
MTCH2(No orient, 4359)
Upstream sequence
gtcgctgggattacaggcgcccaacaccacgcccagctaatttttgttatttttagtagagacggggttttgccatgttggtcaggctggtctcgaactc
Downstream sequence
ccaacctcaggtgatctgcctgccttggccttccaaagtgctgggattacaggtgtgagtcaccgcgtccagccTTCGAGAAGGTGTCTTTTTAAAAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate