Basic Information
VIS ID
TVIS30005795
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.12
Reference genome
GRCh37/hg19
Start
50211813/50252642 (Hg38)
End
50211813/50252642 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/2155784; hsa-let-7a-2/Downstream/6491231;
Nearest TSS
ENST00000527297/Upstream/270107; ENST00000525654/Downstream/45937;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/358822, chr11-CpG: 25/Downstream/15218
Nearby gene
LOC441601(No orient, 27186)
Upstream sequence
GAATAAGTACATATATTTAACAAAAAATATATACTGATAGTAGTTTCTTTTAACATACAAGATTATCAGTAGCTTTGTGTATGTGTTTCTTTTACTGAGT
Downstream sequence
TAAAAAGTTCATCATTAATGAGTTTAAAGTGAATTAGGATATTATGAACAATATTCACTGTGACGGATCCTTACATTTTTGTGCCAAAGTTGCTCAAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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