Basic Information
VIS ID
TVIS30005801
Fusion event
HIV-LOC283194 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58771648/59004175 (Hg38)
End
58771648/59004175 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC283194
Nearest miRNA
hsa-mir-129-2/Upstream/1362889; hsa-let-7a-2/Downstream/590902;
Nearest TSS
ENST00000527297/Upstream/24890; ENST00000527482/Downstream/54275;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/40113, chr11-CpG: 49/Downstream/58415
Upstream sequence
tttactttgattgcagtgattgtgggtcccattgcagtcacagctactgctgcagctgctggaatttctttacactcctctgttcaaactgcagaatacg
Downstream sequence
taaataattggcaaaagaattcctcaaaattgtgaaattctcagacccaaatagataaaaaattggcaaaccaaattaatgatcttagacaaaccgtcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate