Basic Information
VIS ID
TVIS30005802
Fusion event
HIV-FAM111B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58887449/59119976 (Hg38)
End
58887449/59119976 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM111B
miRNAs that regulate target gene
hsa-mir-192-5p
Nearest miRNA
hsa-mir-129-2/Upstream/1478690; hsa-let-7a-2/Downstream/475101;
Nearest TSS
ENST00000527297/Upstream/10442; ENST00000531676/Downstream/20139;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/12963, chr11-CpG: 36/Downstream/22678
Upstream sequence
ggaacaaagcatattcatgaaatatccacagatggtatcatatctatttttgaaacaaaaaatatttatagataaaatattagaatgattgtaaagtagc
Downstream sequence
atattggctagggttaaggttgatatttacaaaacaatggatttagcttagtcagcaatatcagaaaatgtaatcatcaaaaattattttataatgccta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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