VISDB Viral Integration Site DataBase

VIS ID

TVIS30005812

Fusion event

HIV-CPSF7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q12.2

Reference genome

Start

End

61170634/61403162 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-30c-2-3p ; hsa-mir-484 ; hsa-mir-378a-3p ; hsa-mir-23b-3p ; hsa-mir-26b-5p ; hsa-mir-8057 ; hsa-mir-6792-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-760 ; hsa-mir-6822-3p ; hsa-mir-3194-3p ; hsa-mir-6804-5p ; hsa-mir-2467-3p ; hsa-mir-922 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1275 ; hsa-mir-193b-5p ; hsa-mir-3170 ; hsa-mir-3616-5p ; hsa-mir-3689d ; hsa-mir-4450 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4795-5p ; hsa-mir-491-5p ; hsa-mir-5010-5p ; hsa-mir-5698 ; hsa-mir-573 ; hsa-mir-6134 ; hsa-mir-625-5p ; hsa-mir-6751-5p ; hsa-mir-6803-5p ; hsa-mir-6851-5p ; hsa-mir-6855-5p ; hsa-mir-6857-5p ; hsa-mir-6870-5p ; hsa-mir-6890-5p ; hsa-mir-7109-5p ; hsa-mir-7111-5p ; hsa-mir-7847-3p ; hsa-mir-8089 ; hsa-mir-92a-1-5p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-129-2/Upstream/1194006; hsa-let-7a-2/Downstream/105434;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/10349, chr11-CpG: 88/Downstream/26287

Upstream sequence

GTGGAGGTGGGGATGGGGTTGGGGGACAGGGGAAAAAAAGCTCCAACCTGTAGCCTCTGTCCCAAGGGAATGTGCCTCTCCAATCCTGCGGGGGACTCCC

Downstream sequence

TCAGTGACTGAGGGCTATATGAGAAACGTGCTGGGAACAGAGGACGGGTTTAGTCCAATTCAGTCTCTCTCCTCTGACCCAGAAGGGTCTCTAGTGACCC