Basic Information
VIS ID
TVIS30005813
Fusion event
HIV-EEF1G integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62338238/62570766 (Hg38)
End
62338238/62570766 (Hg38)
Orient
-
Location type
Intronic
Target gene
EEF1G
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-129-2/Upstream/3695; hsa-let-7a-2/Downstream/219049;
Nearest TSS
ENST00000527297/Upstream/14531; ENST00000532626/Downstream/1977;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/23184, chr11-CpG: 39/Downstream/2990
Upstream sequence
gcctcagcctcccaagtagctggggctataggtgtgcgccaccacacctggctaattttttgtatttttagtagagacagggttttaccatgttggccag
Downstream sequence
gctggtctcaaactcctgacctcaggtgatctgcctacctcggccccccagtgtgctcggattacaggcatgagccactgcacccACCTCTAGCTGTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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