Basic Information
VIS ID
TVIS30005816
Fusion event
HIV-STX5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62585326/62817854 (Hg38)
End
62585326/62817854 (Hg38)
Orient
-
Location type
Intronic
Target gene
STX5
miRNAs that regulate target gene
hsa-mir-155-5p
Nearest miRNA
hsa-mir-129-2/Upstream/25083; hsa-let-7a-2/Downstream/1523995;
Nearest TSS
ENST00000527297/Upstream/11552; ENST00000535867/Downstream/7672;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/12177, chr11-CpG: 111/Downstream/13353
Upstream sequence
aatttgaaactgaaaattatctaaaaaaattcaccaaatgggcttaacagcagattgACCTGAAAATATACATAAAATAAATATAAACTTATTatataag
Downstream sequence
acatgtacctggaaacatatatatgtatatatttccagatggtaaggacagaaagaggcagaaaaatgtttaaagtaataatagccaaatacttcctaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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