Basic Information
VIS ID
TVIS30005825
Fusion event
HIV-EHD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
64639974/64872502 (Hg38)
End
64639974/64872502 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
EHD1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-6739-5p ; hsa-mir-670-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4329 ; hsa-mir-6859-3p ; hsa-mir-7113-3p ; hsa-mir-4324 ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-4732-3p ; hsa-mir-125a-5p ; hsa-mir-345-3p ; hsa-mir-645 ; hsa-mir-1226-3p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-26a-5p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-1237/Upstream/503799; hsa-let-7a-2/Downstream/6021;
Nearest TSS
ENST00000527297/Upstream/12457; ENST00000413292/Downstream/3164;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/17728, chr11-CpG: 124/Downstream/5455
Upstream sequence
gtgaaccgagatcatgccactgcactccagcctgggcgatagagcgacactctgtctcaaaaaaataaaagaGTAACTTAATCAGATTTTCTGACCTTGC
Downstream sequence
TTTGGCAAATGACAGGGCTTTTGCTTATCCGGCATTTACTAAAACTAGGTTGGAACAACAATAGCAGTAAGAAATAAAAATACTAGCCCTCGCTTTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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