VISDB Viral Integration Site DataBase

VIS ID

TVIS30005848

Fusion event

HIV-PACS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.2

Reference genome

Start

End

65899095/66131624 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-324-5p ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-6869-5p ; hsa-mir-526b-5p ; hsa-mir-431-5p ; hsa-mir-4711-5p ; hsa-mir-935 ; hsa-mir-3662 ; hsa-mir-6513-5p ; hsa-mir-599 ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-3145-3p ; hsa-mir-610 ; hsa-mir-3614-5p ; hsa-mir-4461 ; hsa-mir-6079 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-9-5p ; hsa-mir-8485 ; hsa-mir-1200 ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4682 ; hsa-mir-3653-5p ; hsa-mir-1304-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-2861 ; hsa-mir-3134 ; hsa-mir-449b-3p ; hsa-mir-4534 ; hsa-mir-602 ; hsa-mir-6081 ; hsa-mir-6749-5p ; hsa-mir-8082

Nearest miRNA

hsa-mir-10392/Upstream/482371; hsa-let-7a-2/Downstream/802810;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/60446, chr11-CpG: 120/Downstream/125815

Upstream sequence

actttgtttgtggtgtcctttattcagcagaaatcttttgttttaatttagacatttcctttggtttttccatttataaagatttgtgctttttgatgtc

Downstream sequence

ttacttaagaaatcttttctgggccaggcgtggtggctcatgactgtaatcccagcactttgggaggccaaggtggaaggattgcttgaagccaggagtt