Basic Information
VIS ID
TVIS30005878
Fusion event
HIV-LOC112268076 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67695456/67927985 (Hg38)
End
67695456/67927985 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
LOC112268076
Nearest miRNA
hsa-mir-10392/Upstream/437670; hsa-let-7a-2/Downstream/104879;
Nearest TSS
ENST00000527297/Upstream/41395; ENST00000617449/Downstream/67995;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/121605, chr11-CpG: 76/Downstream/27178
Nearby gene
UNC93B1(No orient, 63115)
Upstream sequence
AATGGTGCCATGAGGGCACATTGATTGGTCTCTAGTACACATGGCTCCTACTGCAAatggtctctaaatgacttcatcagttgctcataaaaaaaatcac
Downstream sequence
cctctgctccaatcgtggaggaagaagtatggattggacctggtgagccacggtaagactgactgctaaactttatgaatgatgaggggatttgcacgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate