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TVIS30005884
Basic Information
VIS ID
TVIS30005884
Fusion event
HIV-PPP6R3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68262444/68494976 (Hg38)
End
68262444/68494976 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
;
FRA11A
Target gene
PPP6R3
miRNAs that regulate target gene
hsa-mir-130b-3p
;
hsa-mir-34a-5p
;
hsa-mir-103a-3p
;
hsa-mir-615-3p
;
hsa-mir-20a-5p
;
hsa-mir-624-3p
;
hsa-mir-17-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-130a-3p
;
hsa-mir-106b-5p
;
hsa-mir-301a-3p
;
hsa-mir-20b-5p
;
hsa-mir-519c-3p
;
hsa-mir-526b-3p
;
hsa-mir-519b-3p
;
hsa-mir-519d-3p
;
hsa-mir-519a-3p
;
hsa-mir-552-5p
;
hsa-mir-652-5p
;
hsa-mir-454-3p
;
hsa-mir-301b-3p
;
hsa-mir-548t-5p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-548ao-5p
;
hsa-mir-548ax
;
hsa-mir-548az-5p
;
hsa-mir-7854-3p
;
hsa-mir-759
;
hsa-mir-3174
;
hsa-mir-3678-3p
;
hsa-mir-3944-5p
;
hsa-mir-4519
;
hsa-mir-2467-3p
;
hsa-mir-5586-3p
;
hsa-mir-1273h-3p
;
hsa-mir-623
;
hsa-mir-542-3p
;
hsa-mir-107
;
hsa-mir-1909-5p
;
hsa-mir-2277-3p
;
hsa-mir-6780b-3p
;
hsa-mir-6841-3p
;
hsa-mir-4780
;
hsa-mir-5190
;
hsa-mir-6866-3p
;
hsa-mir-188-5p
;
hsa-mir-4696
;
hsa-mir-5585-5p
;
hsa-mir-32-3p
;
hsa-mir-548n
;
hsa-mir-15a-5p
;
hsa-mir-15b-5p
;
hsa-mir-16-5p
;
hsa-mir-195-5p
;
hsa-mir-214-3p
;
hsa-mir-3619-5p
;
hsa-mir-424-5p
;
hsa-mir-4264
;
hsa-mir-4291
;
hsa-mir-4704-3p
;
hsa-mir-497-5p
;
hsa-mir-6838-5p
;
hsa-mir-761
;
hsa-mir-922
Nearest miRNA
hsa-mir-10392/Upstream/450019; hsa-let-7a-2/Downstream/588200;
Nearest TSS
ENST00000527297/Upstream/34163;
ENST00000531244/Downstream/24530;
Nearest CpG islands
None/Target,
chr11-CpG: 30/Upstream/33868
,
chr11-CpG: 28/Downstream/175195
Upstream sequence
TTTTACAATATACAGTTAATTTCTTAGTGTCATCAGCTATAAATGGAGTTATGAGAAATAAGTGAAAATTGTTCAATAAATATTTCAGTGCCTGTGAAGT
Downstream sequence
GCCAGGCTCAAAAATGTTTAAGAACTGCCTGGCACATATGAGATCCTCTGTAAAAGTAGTAGCCATTGTGATGTACCATAAAGTTTACTTTTCATAATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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