Basic Information
VIS ID
TVIS30005891
Fusion event
HIV-NUMA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
71762301/72051255 (Hg38)
End
71762301/72051255 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
NUMA1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1208 ; hsa-mir-1252-5p ; hsa-mir-1911-3p ; hsa-mir-1972 ; hsa-mir-211-3p ; hsa-mir-4466 ; hsa-mir-4767 ; hsa-mir-6721-5p ; hsa-mir-6753-5p ; hsa-mir-675-5p ; hsa-mir-6760-3p ; hsa-mir-6816-3p ; hsa-mir-7112-3p ; hsa-mir-7112-5p ; hsa-mir-7113-5p
Nearest miRNA
hsa-mir-10392/Upstream/577687; hsa-let-7a-2/Downstream/20973;
Nearest TSS
ENST00000527297/Upstream/9113; ENST00000537483/Downstream/18808;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/237448, chr11-CpG: 51/Downstream/29084
Upstream sequence
tggaattaaacggtgtgagccaccgtgcTGTCCTATCCACACTTTTAAAGATGCTAATAAATAACGTGATCACCATCAGAGAAAATAAATCCTACGtatc
Downstream sequence
tggcatcactgagaagtacaaaatttcacacaagcaattttcctactaactgaaatttatcccttttaaggcaaagctcttTCTTTATATCAAAACATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate