VISDB Viral Integration Site DataBase

VIS ID

TVIS30005892

Fusion event

HIV-LRTOMT integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.4

Reference genome

Start

End

71798594/72087548 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-7703 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-4731-5p ; hsa-mir-7155-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-4267 ; hsa-mir-1273g-3p ; hsa-mir-1207-3p ; hsa-mir-508-5p ; hsa-mir-6516-5p ; hsa-mir-1227-3p ; hsa-mir-25-5p ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-4684-5p ; hsa-mir-513b-5p ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-3165 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-139-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-6134 ; hsa-mir-1273f ; hsa-mir-4786-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-4793-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-3613-3p ; hsa-mir-6888-5p ; hsa-mir-6502-3p ; hsa-mir-3974 ; hsa-mir-6771-3p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10392/Upstream/15246; hsa-let-7a-2/Downstream/527515;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/6634, chr11-CpG: 42/Downstream/15609

Upstream sequence

attttaaagttgtttgccaatttcattgtctctgcaaactaatttatcctttgaatccaatgatgagaactgcaatcccaaggtttctctttttgctttg

Downstream sequence

gctgccaggaatttcagagctaaatgtaggcttagattcttaaagtgcctggcacatctctctcttcctgtaatctagtttctgatctttctcttccatt