VISDB Viral Integration Site DataBase

VIS ID

TVIS30005894

Fusion event

HIV-CLPB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.4

Reference genome

Start

End

72044561/72333517 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-324-5p ; hsa-let-7a-5p ; hsa-mir-4470 ; hsa-mir-3128 ; hsa-mir-4766-5p ; hsa-mir-6715a-3p ; hsa-mir-3200-5p ; hsa-mir-101-5p ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-4267 ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-508-5p ; hsa-mir-34b-3p ; hsa-mir-548m ; hsa-mir-6510-3p ; hsa-mir-6888-3p ; hsa-mir-873-3p ; hsa-mir-4522 ; hsa-mir-3120-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-5586-3p ; hsa-mir-3664-5p ; hsa-mir-4797-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-299-5p ; hsa-mir-3124-3p ; hsa-mir-5009-3p ; hsa-mir-595 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-1293 ; hsa-mir-149-3p ; hsa-mir-1976 ; hsa-mir-3065-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3165 ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-363-5p ; hsa-mir-3653-5p ; hsa-mir-383-3p ; hsa-mir-3913-5p ; hsa-mir-4279 ; hsa-mir-4483 ; hsa-mir-450a-1-3p ; hsa-mir-4722-3p ; hsa-mir-4728-5p ; hsa-mir-498 ; hsa-mir-544b ; hsa-mir-6089 ; hsa-mir-649 ; hsa-mir-6513-5p ; hsa-mir-6727-3p ; hsa-mir-6745 ; hsa-mir-6747-3p ; hsa-mir-6748-5p ; hsa-mir-6756-5p ; hsa-mir-6765-3p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6778-3p ; hsa-mir-6785-5p ; hsa-mir-6787-3p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6849-3p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7162-3p ; hsa-mir-887-5p ; hsa-mir-942-3p ; hsa-mir-3658 ; hsa-mir-382-3p ; hsa-mir-4703-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-7856-5p

Nearest miRNA

hsa-mir-10392/Upstream/261215; hsa-let-7a-2/Downstream/281546;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/88868, chr11-CpG: 42/Downstream/100594

Upstream sequence

atgaatagtttccctctttatatttcacgactgttctgtagcaactgataccttggccactctctcctttgagttctataaaaccacttttcaggttttc

Downstream sequence

ttcccactcttgtgaccatttcttctgtttcttttgcagactcctcttcctgtctttaagattattaggtgctacctagagttcgagtccAGCACAATTC