VISDB Viral Integration Site DataBase

VIS ID

TVIS30005910

Fusion event

HIV-FAM168A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.4

Reference genome

Start

End

73234633/73523588 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-10a-5p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-555 ; hsa-mir-765 ; hsa-mir-5702 ; hsa-mir-6861-5p ; hsa-mir-6742-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-331-3p ; hsa-mir-3139 ; hsa-mir-708-5p ; hsa-mir-28-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-6801-5p ; hsa-mir-4266 ; hsa-mir-766-5p ; hsa-mir-3202 ; hsa-mir-3179 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-4722-5p ; hsa-mir-6731-5p ; hsa-mir-1827 ; hsa-mir-4768-3p ; hsa-mir-4259 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6888-5p ; hsa-mir-548e-5p

Nearest miRNA

hsa-mir-10392/Upstream/739996; hsa-let-7a-2/Downstream/875649;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/146351, chr11-CpG: 63/Downstream/74166

Upstream sequence

tagtttcacaagtcaaactcaatactataaggcttatatcaaaaaagcagcaatcccctatcttacctttgacctctgcttcccaatggtaatcacgttc

Downstream sequence

aacttttAGcaccatgcctggttaatttttctgtttttgtagggacggggtttcgccacgttgcccaggctggtctcaaactcttcctggacccaagcca