Basic Information
VIS ID
TVIS30005914
Fusion event
HIV-LOC100037267 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
73701461/73990416 (Hg38)
End
73701461/73990416 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
LOC100037267
Nearest miRNA
hsa-mir-10392/Upstream/1206824; hsa-let-7a-2/Downstream/408821;
Nearest TSS
ENST00000527297/Upstream/7109; ENST00000542710/Downstream/11838;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6659, chr11-CpG: 58/Downstream/180438
Nearby gene
UCP2(No orient, 7572)
Upstream sequence
gagatggcgccactgcactccagcttgagtgactgtctcaaaataataataataaataaataaaaacaaACGATCCAACCCATACCACCAACTGATAAAG
Downstream sequence
AAACAAACAAATGAGTTATGCAAAAGAAAAGTCATGCTTTTTGGTTTAATCCTACTTTAAGAACACTAACAATAATTTGCATGCAATACATACAGTTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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