Basic Information
VIS ID
TVIS30005918
Fusion event
HIV-PPME1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
73938753/74227708 (Hg38)
End
73938753/74227708 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
PPME1
Nearest miRNA
hsa-mir-10392/Upstream/1444116; hsa-let-7a-2/Downstream/171529;
Nearest TSS
ENST00000527297/Upstream/56365; ENST00000535205/Downstream/3077;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/56181, chr11-CpG: 38/Downstream/83675
Upstream sequence
GCTTCTCAGAAAATTAACCTAGCATTAAAATATGACAGAAtccctttaaaaagcatccaccaaaattgtaatacatccagttacagtctagatttgtagg
Downstream sequence
taacccttgctacttcatctttattgtatttctctggattttcaggacttatctcaagtaaggtacttgttgactgaatgctctgcttgattttaataac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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