Basic Information
VIS ID
TVIS30005919
Fusion event
HIV-CYCSP27 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
74193313/74482268 (Hg38)
End
74193313/74482268 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
CYCSP27
Nearest miRNA
hsa-mir-10392/Upstream/82935; hsa-let-7a-2/Downstream/238000;
Nearest TSS
ENST00000527297/Upstream/14539; ENST00000532784/Downstream/11047;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14512, chr11-CpG: 85/Downstream/10822
Nearby gene
LIPT2(No orient, 9610)
Upstream sequence
aaaaaaaaaGTACACAGAGCGGGACGTCCGGCTTCTGAGTGGGAACCTTCCTAGCGCCAGCGACAAAAGAGAGAATTAAATATGGGTGATATTGAGAAAG
Downstream sequence
GCAAGAGGATTTGTACTGAGAAGTATGCCCAGTGCTACACCGTGGAAAACAAAGGCAAGGACAAAACGAGGCCTAATCTCCACCGTCCAGGCCATTGGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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