Basic Information
VIS ID
TVIS30005920
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
74457260/74746215 (Hg38)
End
74457260/74746215 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/25878; hsa-let-7a-2/Downstream/588877;
Nearest TSS
ENST00000527297/Upstream/14830; ENST00000527301/Downstream/2653;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14386, chr11-CpG: 62/Downstream/2861
Nearby gene
RNF169(No orient, 2653)
Upstream sequence
GCAGTGGGTTACGGGTGAACCTGAATCTTGAACGCACCCAAGCCTCCGCCTCCGCGCGACTCGGCGGCAGGAGGGAAAGGGCGAGAACTGATGACTTTCA
Downstream sequence
ATACTCtttttttttttcgagatggagtcttgctctgtcgcccaggctggagagcagtggtgccatctcggcttactgcaacctccgcctcccgggttca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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