Basic Information
VIS ID
TVIS30005923
Fusion event
HIV-THAP12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
GRCh37/hg19
Start
76085960/76374916 (Hg38)
End
76085960/76374916 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
THAP12
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-mir-24-3p
Nearest miRNA
hsa-mir-10392/Upstream/1039730; hsa-let-7a-2/Downstream/3027106;
Nearest TSS
ENST00000527297/Upstream/6273; ENST00000530460/Downstream/6026;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/52713, chr11-CpG: 103/Downstream/5564
Upstream sequence
attgaaacaatccccagtgcagtggtgttgggaggtggggcatctgggagatgacttaggtcatgacggggaagccttatttgccccttccgccatgtga
Downstream sequence
gaacacaacaagaaggcaccatctaagaagccaagagtgagccctcaccagatgccaaatctgctggtgactttatcttggacttcccagcttccagaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate