Basic Information
VIS ID
TVIS30005930
Fusion event
HIV-SYTL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
85462857/85751814 (Hg38)
End
85462857/85751814 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11F
Target gene
SYTL2
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-10392/Upstream/3860978; hsa-let-7a-2/Downstream/526519;
Nearest TSS
ENST00000527297/Upstream/23786; ENST00000529676/Downstream/5911;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/86624, chr11-CpG: 40/Downstream/59153
Upstream sequence
TGTGCTGAACCACACATCTGACACTTAACAAGCCTCTTATCATTTCATCCTTACAATTTCACCATGCTGTTCAAAGAATTTCATCCATTTCAAAAGATGG
Downstream sequence
CCATTTTACCTCTTCTGTATGCTAAAAGCCATATCTAAACCCTGTCTGGCTATTTGTTCACTGACTCATTAATTCCCATACCAGCCATCTGCTTCAAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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