Basic Information
VIS ID
TVIS30005935
Fusion event
HIV-LOC101929174 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
88104847/88371679 (Hg38)
End
88104847/88371679 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929174
Nearest miRNA
hsa-mir-10392/Upstream/195086; hsa-let-7a-2/Downstream/2184095;
Nearest TSS
ENST00000527297/Upstream/33892; ENST00000531994/Downstream/132897;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/33805, chr11-CpG: 96/Downstream/136863
Nearby gene
CTSC(No orient, 33892)
Upstream sequence
TTATAGACAGCAGAGAGCAAAGTCCAGAGTCAGAACCCACAAGTTTGTGGAAAAAAATATTTCTCCTCCAAAGGTCTAGTGCTTTTAAAAATTATCTTGA
Downstream sequence
AGACTCGTGTAGTAGCTACATCTGCTAATGTGAGTTGAGTATTTTCAGAAGATTAAAAGGAAGTTGGCATTAAATTGTGATTACTATCATTCCTTTTCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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