Basic Information
VIS ID
TVIS30005936
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
91739890/92006724 (Hg38)
End
91739890/92006724 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/1137522; hsa-let-7a-2/Downstream/1726950;
Nearest TSS
ENST00000527297/Upstream/203369; ENST00000528921/Downstream/345372;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1783534, chr11-CpG: 204/Downstream/217745
Nearby gene
FAT3(No orient, 345372)
Upstream sequence
attgatcctgggtgtgtctgtgaggatgttgccaaaggagattaacatttgagtcagtgggctggggaaggcagacccacccctaatctggtgggcacca
Downstream sequence
tataatcagctgccagtgaatataaagcaggcagaaaaacgtgaaggggtgagactggcctagcctcccagcctacatctttctcccgtgctggatgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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