VISDB Viral Integration Site DataBase

VIS ID

TVIS30005938

Fusion event

HIV-FAT3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q14.3

Reference genome

Start

End

92231655/92498489 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-132-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-1303 ; hsa-mir-296-3p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-4719 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-32-3p ; hsa-mir-4747-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-7977 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-383-3p ; hsa-mir-4717-5p ; hsa-mir-1295b-3p ; hsa-mir-1270 ; hsa-mir-1273e ; hsa-mir-3160-3p ; hsa-mir-3689d ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4683 ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-5694 ; hsa-mir-6134 ; hsa-mir-620 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-3613-3p ; hsa-mir-3675-3p ; hsa-mir-4662a-5p ; hsa-mir-4676-5p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-575 ; hsa-mir-6771-3p ; hsa-mir-6858-3p

Nearest miRNA

hsa-mir-10392/Upstream/1629287; hsa-let-7a-2/Downstream/1235185;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/271623, chr11-CpG: 35/Downstream/368286

Upstream sequence

TCTTTCAAATTATTTGTCTGTACCTCTCAGGTCATGACTTCCTTCAAATTTGGTGGACCTGTTGGTGCTGAGTGTAAGAGGTCCTCTGTCTCTGGTATCT

Downstream sequence

GACCATTGCACATTTTTAGTAAAACTGACACAGAACAGACAAAGCAAATAACCATCTATAGTTTTAACAGCAACATGAGCTTCAATAATGATCTGCCACT