Basic Information
VIS ID
TVIS30005942
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
GRCh37/hg19
Start
94107696/94374530 (Hg38)
End
94107696/94374530 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/640766; hsa-let-7a-2/Downstream/91965;
Nearest TSS
ENST00000527297/Upstream/68937; ENST00000541144/Downstream/26862;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/244923, chr11-CpG: 57/Downstream/26530
Nearby gene
GPR83(No orient, 2781)
Upstream sequence
aaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttttggccagggcaatcaggcaggagaaggaaataaaggg
Downstream sequence
tattcaattaggaaaagaggaagtcaaatgtccctgtttgcagatgacatgattgtatatctagaaaaccacatcgtctcagcccaaaatctccttaagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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