VISDB Viral Integration Site DataBase

VIS ID

TVIS30005943

Fusion event

HIV-SESN3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q21

Reference genome

Start

End

94920052/95186888 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-590-3p ; hsa-mir-335-5p ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-511-5p ; hsa-mir-8068 ; hsa-mir-431-5p ; hsa-mir-1245b-3p ; hsa-mir-205-3p ; hsa-mir-576-3p ; hsa-mir-3680-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-2053 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-569 ; hsa-mir-1279 ; hsa-mir-3927-5p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-4276 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-3152-3p ; hsa-mir-4697-3p ; hsa-mir-5190 ; hsa-mir-3159 ; hsa-mir-223-3p ; hsa-mir-5587-5p ; hsa-mir-6801-5p ; hsa-mir-3148 ; hsa-mir-539-5p ; hsa-mir-581 ; hsa-mir-622 ; hsa-mir-4712-3p ; hsa-mir-651-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-4317 ; hsa-mir-5589-3p ; hsa-mir-6504-3p ; hsa-mir-3613-3p ; hsa-mir-323a-3p ; hsa-mir-6856-3p ; hsa-mir-92b-3p ; hsa-mir-363-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4503 ; hsa-mir-106a-3p ; hsa-mir-561-5p ; hsa-mir-6792-5p ; hsa-mir-6830-5p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-129-5p ; hsa-mir-4672 ; hsa-mir-3143 ; hsa-mir-219b-3p ; hsa-mir-6768-5p ; hsa-mir-513b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-219a-2-3p ; hsa-mir-374c-5p ; hsa-mir-655-3p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-6515-5p ; hsa-mir-584-5p ; hsa-mir-7847-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-219a-1-3p ; hsa-mir-3616-3p ; hsa-mir-3607-5p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-4761-3p ; hsa-mir-606 ; hsa-mir-592 ; hsa-mir-4669 ; hsa-mir-3657 ; hsa-mir-143-5p ; hsa-mir-5191 ; hsa-mir-4519 ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548e-5p ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-6869-5p ; hsa-mir-625-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-496 ; hsa-mir-3153 ; hsa-mir-6798-5p ; hsa-mir-6794-5p ; hsa-mir-561-3p ; hsa-mir-4716-3p ; hsa-mir-6516-3p

Nearest miRNA

hsa-mir-10392/Upstream/720308; hsa-let-7a-2/Downstream/1154550;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/35241, chr11-CpG: 73/Downstream/43701

Upstream sequence

TAATCTGTAATAATGTaaataaagagggtcattattgaataataaaagaatatacaccagaaaaatatacttgctttacatctgtatgtacctaaCCTTG

Downstream sequence

TAGCCACAAAATATACTAAATGGTTGCAATATTGACTGAAAAAAATTCTACCACTCTAACTTTTACATATTTTATTTTTTATAAGCAATTATATAGTTAC