Basic Information
VIS ID
TVIS30005949
Fusion event
HIV-FAM76B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
GRCh37/hg19
Start
95510141/95776977 (Hg38)
End
95510141/95776977 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM76B
Nearest miRNA
hsa-mir-10392/Upstream/1310397; hsa-let-7a-2/Downstream/564461;
Nearest TSS
ENST00000527297/Upstream/78891; ENST00000538095/Downstream/2227;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/544553, chr11-CpG: 130/Downstream/12319
Upstream sequence
AAAGACATACAACAGCAAAAATAGAGAAAATCATGGAGTCTTATAGTCTTATTAAAAAAAAAAACCCTTGCTTTTGTCAAATTCAAAGTATAACTAAGTT
Downstream sequence
CTCTCTCTCTAACTTTCTCTAATCACAAAAGATTTTCTGTTCTGAAATGCCAACATACACCAGATCAGCTAAGACaattactctattcactacactgtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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