Basic Information
VIS ID
TVIS30005958
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
102426531/102555800 (Hg38)
End
102426531/102555800 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/1035895; hsa-let-7a-2/Downstream/1294106;
Nearest TSS
ENST00000527297/Upstream/25047; ENST00000544115/Downstream/27807;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/102769, chr11-CpG: 66/Downstream/535745
Nearby gene
MMP20(No orient, 21035)
Upstream sequence
AAAAATTATTAGGAGGCTATTATGTGATAGGAAATATTTTCAGTGGTAGAGATAATTTTTCCTTTTCTACAACAAGCTTAAATTGTACTAAGTCACTTAA
Downstream sequence
TATTTATTTGTGTAGTCATTTATTGAACTAACACCATGTAACACGTTTTATGCACATTAGTAATCATTATTTTATtgtatcagcttttgctatgtaataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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