VISDB Viral Integration Site DataBase

VIS ID

TVIS30005961

Fusion event

HIV-AASDHPPT integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q22.3

Reference genome

Start

End

105962201/106091474 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-132-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-143-5p ; hsa-mir-186-5p ; hsa-mir-576-3p ; hsa-mir-936 ; hsa-mir-3944-5p ; hsa-mir-377-3p ; hsa-mir-216b-3p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-8064 ; hsa-mir-409-3p ; hsa-mir-221-5p ; hsa-mir-190a-3p ; hsa-mir-4477a ; hsa-mir-4642 ; hsa-mir-4720-5p ; hsa-mir-4799-3p ; hsa-mir-5011-5p ; hsa-mir-5588-5p ; hsa-mir-8073 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-194-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-7849-3p ; hsa-mir-802 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-8069 ; hsa-mir-1322 ; hsa-mir-1272 ; hsa-mir-656-3p ; hsa-mir-4517 ; hsa-mir-148a-5p ; hsa-mir-4695-5p ; hsa-mir-4417 ; hsa-mir-27a-5p ; hsa-mir-2115-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-194-3p ; hsa-mir-1228-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p

Nearest miRNA

hsa-mir-10392/Upstream/2241494; hsa-let-7a-2/Downstream/5256283;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/13385, chr11-CpG: 137/Downstream/926123

Upstream sequence

GCTTGAATTTGATCTATCTCCATTAAACTTGGATATAGGCCAAGTTTATAAAGAAACACGTTTATTCCTGGATGGAGAGGAAGAAAAAGAATGGGCATTT

Downstream sequence

GAGGTAAGAAATTTGTTAGAATTGTTAAAACTAAGAATTTCTATTTTTTATGCATGTATGTGTGATTAATTTGGGTAAGCTAGTCACTGAATTTGGACGC