Basic Information
VIS ID
TVIS30005965
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
109734395/109863669 (Hg38)
End
109734395/109863669 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/6013689; hsa-let-7a-2/Downstream/1484088;
Nearest TSS
ENST00000527297/Upstream/39822; ENST00000528673/Downstream/229692;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/439412, chr11-CpG: 162/Downstream/228845
Nearby gene
ZC3H12C(No orient, 229692)
Upstream sequence
AGCAAGACATCCCACGACATTCAGTAATTAATAGTATGACCTATATATTATTGGGAAAATTAATGGAGTACATATTTCAAGTAAAATCCATTTAGTAAAT
Downstream sequence
GAAAAATGTTTTAGTTCCACACCATTATCCTCAAAAAGAGGTAAGCCAAAATGAATGAATTGATTCAGTCAGAAAGAGGAATAAGAATCACATAGTTAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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