VISDB Viral Integration Site DataBase

VIS ID

TVIS30005966

Fusion event

HIV-ZC3H12C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q22.3

Reference genome

Start

End

110034622/110163897 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-361-5p ; hsa-mir-192-5p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-342-3p ; hsa-mir-31-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-1279 ; hsa-mir-548t-5p ; hsa-mir-5590-5p ; hsa-mir-548az-5p ; hsa-mir-4786-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-5585-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-4635 ; hsa-mir-654-3p ; hsa-mir-382-3p ; hsa-mir-551b-5p ; hsa-mir-4769-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6773-3p ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-5196-3p ; hsa-mir-500b-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-576-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1183 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4719 ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-501-3p ; hsa-mir-502-3p ; hsa-mir-6771-3p ; hsa-mir-767-5p ; hsa-mir-889-3p ; hsa-mir-4693-3p

Nearest miRNA

hsa-mir-10392/Upstream/6313917; hsa-let-7a-2/Downstream/1183860;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/69946, chr11-CpG: 147/Downstream/131942

Upstream sequence

AGCCAAAAGTTCTGGAAGTggctgggtgcagtggctcaaatctgtaatcccagcagtttgggaggccaaggtgggcagatcacatgaggccaggagttga

Downstream sequence

gaccagcctggctaacatggagaaaccctgtctctacttaaaatacaaaaaaattcaccaggcttggtagcgcacgcctgtgatcccagctactcagatg