VISDB Viral Integration Site DataBase

VIS ID

TVIS30005969

Fusion event

HIV-ALG9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q23.1

Reference genome

Start

End

111714176/111843453 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-513a-5p ; hsa-mir-130b-5p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-4495 ; hsa-mir-379-3p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-30d-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-4266 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-4524a-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-6165 ; hsa-mir-302f ; hsa-mir-4772-5p ; hsa-mir-5590-3p ; hsa-mir-873-5p ; hsa-mir-142-5p ; hsa-mir-624-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-7-5p ; hsa-mir-3611 ; hsa-mir-4693-5p ; hsa-mir-3185 ; hsa-mir-4512 ; hsa-mir-4773 ; hsa-mir-4318 ; hsa-mir-892a ; hsa-mir-7703 ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1292-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-6070 ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-4267 ; hsa-mir-5588-3p ; hsa-mir-1273a ; hsa-mir-766-3p ; hsa-mir-7977 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-376a-5p ; hsa-mir-4766-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-3121-3p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-431-3p ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-7160-5p ; hsa-mir-7162-3p

Nearest miRNA

hsa-mir-10392/Upstream/329938; hsa-let-7a-2/Downstream/1606570;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/76963, chr11-CpG: 47/Downstream/35393

Upstream sequence

taactataaaaggctatttttcagacaatctaggaaatcaatgggtattagatgatattaagaaattactgataattttattaggataatggcattatgg

Downstream sequence

ctacgttgaaacaaaagtcctAACACCAAAGAAAAGTGACTCTGAAGGCTGCTCTAATATTCTTATAATACAACGAACTCATTATAAACCATTAATAGTA